{"id":7187,"date":"2022-04-06T10:50:10","date_gmt":"2022-04-06T08:50:10","guid":{"rendered":"https:\/\/tefor.net\/publications-medias\/"},"modified":"2025-04-02T11:51:29","modified_gmt":"2025-04-02T09:51:29","slug":"publications-medias","status":"publish","type":"page","link":"https:\/\/tefor.net\/en\/publications-medias\/","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"

Publications of TEFOR Paris-Saclay<\/p>\n<\/div>

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See recent TEFOR Paris-Saclay publications<\/h2><\/span>
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The TEFOR Paris-Saclay teams publish in scientific journals for its technological research, but also with their users.<\/p>\n

Staff are also involved in science popularisation activities. On this page you will find all TEFOR Paris-Saclay publications.<\/p>\n<\/div><\/div><\/div><\/div><\/div>

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Publications<\/h2><\/span>
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2024<\/strong><\/span><\/p>\n

Estienne P, Simion M, Hagio H, Yamamoto N, Jenett A, Yamamoto K. Different ways of evolving tool-using brains in teleosts and amniotes.<\/strong> Commun Biol. 2024 Jan 12;7(1):88. doi: 10.1038\/s42003-023-05663-8. PMID: 38216631; PMCID: PMC10786859.<\/p>\n

Djebar M, Anselme I, Pezeron G, Bardet PL, Cantaut-Belarif Y, Eschstruth A, L\u00f3pez-Santos D, Le Ribeuz H, Jenett A, Khoury H, Veziers J, Parmentier C, Hirschler A, Carapito C, Bachmann-Gagescu R, Schneider-Maunoury S, Vesque C. Astrogliosis and neuroinflammation underlie scoliosis upon cilia dysfunction<\/strong>. Elife. 2024 Oct 10;13:RP96831. doi: 10.7554\/eLife.96831. PMID: 39388365; PMCID: PMC11466456.<\/p>\n<\/div>

2023<\/strong><\/span><\/p>\n

Bataille S, Jalaber H, Colin I, Remy D, Affaticati P, Froc C, Levraud JP, Vernier P, Demarque M. Plasticity of Dopaminergic Phenotype and Locomotion in Larval Zebrafish Induced by Brain Excitability Changes during the Embryonic Period.<\/strong> eNeuro. 2023 Jun 27;10(6):ENEURO.0320-21.2023. doi: 10.1523\/ENEURO.0320-21.2023. PMID: 37316295; PMCID: PMC10306124.<\/p>\n<\/div>

2022<\/strong><\/span><\/p>\n

Lempereur S, Machado E, Licata F, Simion M, Buzer L, Robineau I, H\u00e9mon J, Banerjee P, De Croz\u00e9 N, L\u00e9onard M, Affaticati P, Talbot H, Joly JS. ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 days post-fertilization zebrafish following simultaneous visualization with identical orientations.<\/strong> Dev Biol. 2022 Oct;490:86-99. doi: 10.1016\/j.ydbio.2022.07.004. Epub 2022 Jul 14. PMID: 35841952.<\/p>\n

Banerjee P, Joly P, Jouneau L, Jaszczyszyn Y, Bourge M, Affaticati P, Levraud JP, Boudinot P, Joly JS. Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury<\/strong>. Cells. 2022 Jun 24;11(13):2016. doi: 10.3390\/cells11132016. PMID: 35805100; PMCID: PMC9266167.<\/p>\n<\/div>

Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury.<\/strong>
\nBanerjee P, Joly P, Jouneau L, Jaszczyszyn Y, Bourge M, Affaticati P, Levraud JP, Boudinot P, Joly JS.
\nCells. 2022 Jun 24;11(13):2016. doi: 10.3390\/cells11132016. PMID: 35805100; PMCID: PMC9266167.<\/em><\/p>\n<\/div>

ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 days post-fertilization zebrafish following simultaneous visualization with identical orientations<\/strong>
\nLempereur S, Machado E, Licata F, Simion M, Buzer L, Robineau I, H\u00e9mon J,\u00a0Banerjee P, De Croz\u00e9 N, L\u00e9onard M, Affaticati P, Talbot H, Joly JS. Dev Biol. 2022 Oct;490:86-99. doi: 10.1016\/j.ydbio.2022.07.004. Epub 2022 Jul 14. PMID: 35841952<\/em><\/p>\n<\/div>

2020
\n<\/strong><\/span>Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains.<\/strong><\/a>
\nLempereur, S., Jenett, A., Machado, E., Arganda-Carreras, I., Simion, M., Affaticati, P., Joly, J., & Talbot, H.
\n(2020). Mathematical Morphology \u2013 Theory and Applications, 4(1), 31-45.<\/em><\/p>\n<\/div>

Non-thalamic origin of zebrafish sensory relay nucleus: convergent evolution of visual pathways in amniotes and teleosts.<\/strong><\/a>
\nBloch, S., Hagio, H., Thomas, M., Heuz\u00e9, A., Hermel, J.M., Lasserre, E., Colin, I., Saka, K., Affaticati, P., Jenett, A., Kawakami, K., Yamamoto, N., Yamamoto, K. Preprint. 2020 May. doi:10.1101\/2020.05.16.099010<\/em><\/p>\n<\/div>

Registered, standardized and interactive: a review of online resources for zebrafish neuroanatomy.<\/strong>
\nJenett, A.\u00a0In Gerlai RT (ed). Behavioral and Neural Genetics of Zebrafish<\/a><\/u>. San Diego: Elsevier Inc.\/Academic Press, 2020 Apr.
\nHardcover ISBN: 9780128175286, eBook ISBN: 9780128175293<\/em><\/p>\n<\/div>

Comme un poisson dans l\u2019eau ! Consid\u00e9rations sur le bien-\u00eatre et l\u2019\u00e9levage des poissons z\u00e8bres.<\/a><\/strong>
\nSchwartz, M.E., Jourdain, V., Simion, M.
\nSTAL, revue de l\u2019AFSTAL \u201cLes poissons au coeur des labos\u201d. 2020 March.<\/em><\/p>\n<\/div>

2015-2018<\/strong><\/span>
\nThe role of neuro-epithelial-like and radial-glial stem and progenitor cells in development, plasticity, and repair.<\/a><\/strong>
\nLindsey, B.W., Hall, Z.J., Heuz\u00e9, A., Joly, J.S., Tropepe, V., Kaslin, J.
\nProg. Neurobiol. 2018 Nov. doi: 10.1016\/j.pneurobio.2018.06.004.\u00a0PMID: 29902500<\/em><\/p>\n<\/div>

Fibrillarin is essential for S-phase progression and neuronal differentiation in zebrafish dorsal midbrain and retina.<\/a><\/strong>
\nBouffard, S., Dambroise, E., Brombin, A., Lempereur, S., Hatin, I., Simion, M., Corre, R., Bourrat, F., Joly, J.S., Jamen, F.
\nDevelopmental Biology. 2018 May 1. doi: 10.1016\/j.ydbio.2018.02.006.\u00a0PMID: 29477341<\/em><\/p>\n<\/div>

The trouble with collective nouns for genome editing.<\/a><\/strong>
\nWells S, Joly JS.
\nMamm Genome. 2017 Jul 18. doi: 10.1007\/s00335-017-9707-6. PMID: 28726008<\/em><\/p>\n<\/div>

Imaging of viral neuroinvasion in the zebrafish reveals that Sindbis and chikungunya viruses favour different entry routes.<\/a><\/strong>
\nPassoni G, Langevin C, Palha N, Mounce BC, Briolat V, Affaticati P, De Job E, Joly JS, Vignuzzi M, Saleh MC, Herbomel P, Boudinot P, Levraud JP.
\nDis Model Mech. 2017 Jul 1;10(7):847-857. doi: 10.1242\/dmm.029231. Epub 2017\u00a0May 8.\u00a0PMID: 28483796<\/em><\/p>\n<\/div>

Comparative analysis of monoaminergic cerebrospinal fluid-contacting cells in<\/a> Osteichthyes (bony vertebrates).<\/a><\/strong>
\nXavier AL, Fontaine R, Bloch S, Affaticati P, Jenett A, Demarque M, Vernier P, Yamamoto K.
\nJ Comp Neurol. \u00a02017 Jun 15;525(9):2265-2283. doi: 10.1002\/cne.24204. Epub 2017\u00a0Mar 29.\u00a0PMID: 28295297<\/em><\/p>\n<\/div>

Human amniotic fluid contaminants alter thyroid hormone signalling and early brain development in Xenopus embryos.<\/a><\/strong>
\nFini JB, Mughal BB, Le M\u00e9vel S, Leemans M, Lettmann M, Spirhanzlova P, Affaticati P, Jenett A, Demeneix BA.
\nSci Rep. 2017 Mar 7;7:43786. doi: 10.1038\/srep43786.\u00a0PMID: 28266608<\/em><\/p>\n<\/div>

High-resolution 3D imaging of whole organ after clearing: taking a new look at the zebrafish testis.<\/a><\/strong>
\nFr\u00e9taud M, Rivi\u00e8re L, Job \u00c9, Gay S, Lareyre JJ, Joly JS, Affaticati P, Thermes V.
\nSci Rep. 2017 Feb 17;7:43012. doi: 10.1038\/srep43012.\u00a0PMID: 28211501<\/em><\/p>\n<\/div>

Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial-Type Gene Expression Profile.<\/a><\/strong>
\nDambroise E, Simion M, Bourquard T, Bouffard S, Rizzi B, Jaszczyszyn Y, Bourge M, Affaticati P, Heuz\u00e9 A, Jouralet J, Edouard J, Brown S, Thermes C, Poupon A, Reiter E, Sohm F, Bourrat F, Joly JS.
\nStem Cells. 2017 Jun;35(6):1505-1518. doi: 10.1002\/stem.2588. Epub 2017 Mar 14.\u00a0PMID: 28181357<\/em><\/p>\n<\/div>

A novel brain tumour model in zebrafish reveals the role of YAP activation in MAPK- and PI3K-induced malignant growth.<\/a><\/strong>
\nMayrhofer M, Gourain V, Reischl M, Affaticati P, Jenett A, Joly JS, Benelli M, Demichelis F, Poliani PL, Sieger D, Mione M.
\nDis Model Mech. 2017 Jan 1;10(1):15-28. doi: 10.1242\/dmm.026500. Epub 2016 Nov\u00a024.\u00a0PMID: 27935819<\/em><\/p>\n<\/div>

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.<\/a><\/strong>
\nHaeussler M, Sch\u00f6nig K, Eckert H, Eschstruth A, Miann\u00e9 J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J, Joly JS, Concordet JP.
\nGenome Biol.<\/em> 2016 Jul 5;17(1):148. doi: 10.1186\/s13059-016-1012-2.\u00a0PMID: 27380939<\/em><\/p>\n<\/div>

Transgenic Zebrafish Expressing mCherry in the Mitochondria of Dopaminergic Neurons.<\/a><\/strong>
\nNoble S, Godoy R, Affaticati P, Ekker M.
\nZebrafish. 2015 Oct;12(5):349-56. doi: 10.1089\/zeb.2015.1085. Epub 2015 Sep 10.\u00a0PMID: 26355474<\/em><\/p>\n<\/div>

Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain.<\/a><\/strong>
\nAffaticati P, Yamamoto K, Rizzi B, Bureau C, Peyri\u00e9ras N, Pasqualini C, Demarque M, Vernier P.
\nSci Rep. 2015 Mar 4;5:8738. doi: 10.1038\/srep08738.\u00a0PMID: 25736911<\/em><\/p>\n<\/div><\/div><\/div>

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M\u00e9dias<\/h2><\/span>
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(FR \u2013 Tribune)<\/span><\/strong>
\nL\u2019Europe doit s\u2019engager dans la transition g\u00e9n\u00e9tique<\/a><\/strong>
\nJean-St\u00e9phane JOLY
\n2018 Nov 11, Le Monde<\/p>\n<\/div>

(FR \u2013 Movie)<\/span><\/strong>
\nLes Myst\u00e8res du XXIe si\u00e8cle : \u201cLa recherche aujourd\u2019hui pour quelles innovations demain ?\u201d<\/strong>
\nJean-St\u00e9phane JOLY –\u00a02017 Nov, Conf\u00e9rences \u201cTable Ronde Innovation et Sant\u00e9\u201d<\/p>\n