PUBLICATIONS & MÉDIAS

Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury.
Banerjee P, Joly P, Jouneau L, Jaszczyszyn Y, Bourge M, Affaticati P, Levraud JP, Boudinot P, Joly JS.
Cells. 2022 Jun 24;11(13):2016. doi: 10.3390/cells11132016. PMID: 35805100; PMCID: PMC9266167.

ZeBraInspector, a platform for the automated segmentation and analysis of body and brain volumes in whole 5 days post-fertilization zebrafish following simultaneous visualization with identical orientations
Lempereur S, Machado E, Licata F, Simion M, Buzer L, Robineau I, Hémon J, Banerjee P, De Crozé N, Léonard M, Affaticati P, Talbot H, Joly JS. Dev Biol. 2022 Oct;490:86-99. doi: 10.1016/j.ydbio.2022.07.004. Epub 2022 Jul 14. PMID: 35841952

Automated segmentation of thick confocal microscopy 3D images for the measurement of white matter volumes in zebrafish brains.
Lempereur, S., Jenett, A., Machado, E., Arganda-Carreras, I., Simion, M., Affaticati, P., Joly, J., & Talbot, H.
(2020). Mathematical Morphology – Theory and Applications, 4(1), 31-45.

Non-thalamic origin of zebrafish sensory relay nucleus: convergent evolution of visual pathways in amniotes and teleosts.
Bloch, S., Hagio, H., Thomas, M., Heuzé, A., Hermel, J.M., Lasserre, E., Colin, I., Saka, K., Affaticati, P., Jenett, A., Kawakami, K., Yamamoto, N., Yamamoto, K. Preprint. 2020 May. doi:10.1101/2020.05.16.099010

Registered, standardized and interactive: a review of online resources for zebrafish neuroanatomy.
Jenett, A. In Gerlai RT (ed). Behavioral and Neural Genetics of Zebrafish. San Diego: Elsevier Inc./Academic Press, 2020 Apr.
Hardcover ISBN: 9780128175286, eBook ISBN: 9780128175293

Comme un poisson dans l’eau ! Considérations sur le bien-être et l’élevage des poissons zèbres.
Schwartz, M.E., Jourdain, V., Simion, M.
STAL, revue de l’AFSTAL “Les poissons au coeur des labos”. 2020 March.

The role of neuro-epithelial-like and radial-glial stem and progenitor cells in development, plasticity, and repair.
Lindsey, B.W., Hall, Z.J., Heuzé, A., Joly, J.S., Tropepe, V., Kaslin, J.
Prog. Neurobiol. 2018 Nov. doi: 10.1016/j.pneurobio.2018.06.004. PMID: 29902500

Fibrillarin is essential for S-phase progression and neuronal differentiation in zebrafish dorsal midbrain and retina.
Bouffard, S., Dambroise, E., Brombin, A., Lempereur, S., Hatin, I., Simion, M., Corre, R., Bourrat, F., Joly, J.S., Jamen, F.
Developmental Biology. 2018 May 1. doi: 10.1016/j.ydbio.2018.02.006. PMID: 29477341

The trouble with collective nouns for genome editing.
Wells S, Joly JS.
Mamm Genome. 2017 Jul 18. doi: 10.1007/s00335-017-9707-6. PMID: 28726008

Imaging of viral neuroinvasion in the zebrafish reveals that Sindbis and chikungunya viruses favour different entry routes.
Passoni G, Langevin C, Palha N, Mounce BC, Briolat V, Affaticati P, De Job E, Joly JS, Vignuzzi M, Saleh MC, Herbomel P, Boudinot P, Levraud JP.
Dis Model Mech. 2017 Jul 1;10(7):847-857. doi: 10.1242/dmm.029231. Epub 2017 May 8. PMID: 28483796

Comparative analysis of monoaminergic cerebrospinal fluid-contacting cells in Osteichthyes (bony vertebrates).
Xavier AL, Fontaine R, Bloch S, Affaticati P, Jenett A, Demarque M, Vernier P, Yamamoto K.
J Comp Neurol.  2017 Jun 15;525(9):2265-2283. doi: 10.1002/cne.24204. Epub 2017 Mar 29. PMID: 28295297

Human amniotic fluid contaminants alter thyroid hormone signalling and early brain development in Xenopus embryos.
Fini JB, Mughal BB, Le Mével S, Leemans M, Lettmann M, Spirhanzlova P, Affaticati P, Jenett A, Demeneix BA.
Sci Rep. 2017 Mar 7;7:43786. doi: 10.1038/srep43786. PMID: 28266608

High-resolution 3D imaging of whole organ after clearing: taking a new look at the zebrafish testis.
Frétaud M, Rivière L, Job É, Gay S, Lareyre JJ, Joly JS, Affaticati P, Thermes V.
Sci Rep. 2017 Feb 17;7:43012. doi: 10.1038/srep43012. PMID: 28211501

Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial-Type Gene Expression Profile.
Dambroise E, Simion M, Bourquard T, Bouffard S, Rizzi B, Jaszczyszyn Y, Bourge M, Affaticati P, Heuzé A, Jouralet J, Edouard J, Brown S, Thermes C, Poupon A, Reiter E, Sohm F, Bourrat F, Joly JS.
Stem Cells. 2017 Jun;35(6):1505-1518. doi: 10.1002/stem.2588. Epub 2017 Mar 14. PMID: 28181357

A novel brain tumour model in zebrafish reveals the role of YAP activation in MAPK- and PI3K-induced malignant growth.
Mayrhofer M, Gourain V, Reischl M, Affaticati P, Jenett A, Joly JS, Benelli M, Demichelis F, Poliani PL, Sieger D, Mione M.
Dis Model Mech. 2017 Jan 1;10(1):15-28. doi: 10.1242/dmm.026500. Epub 2016 Nov 24. PMID: 27935819

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.
Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J, Joly JS, Concordet JP.
Genome Biol. 2016 Jul 5;17(1):148. doi: 10.1186/s13059-016-1012-2. PMID: 27380939

Transgenic Zebrafish Expressing mCherry in the Mitochondria of Dopaminergic Neurons.
Noble S, Godoy R, Affaticati P, Ekker M.
Zebrafish. 2015 Oct;12(5):349-56. doi: 10.1089/zeb.2015.1085. Epub 2015 Sep 10. PMID: 26355474

Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain.
Affaticati P, Yamamoto K, Rizzi B, Bureau C, Peyriéras N, Pasqualini C, Demarque M, Vernier P.
Sci Rep. 2015 Mar 4;5:8738. doi: 10.1038/srep08738. PMID: 25736911

(FR – Tribune)
L’Europe doit s’engager dans la transition génétique
Jean-Stéphane JOLY
2018 Nov 11, Le Monde

(FR – Movie)
Les Mystères du XXIe siècle : “La recherche aujourd’hui pour quelles innovations demain ?”
Jean-Stéphane JOLY – 2017 Nov, Conférences “Table Ronde Innovation et Santé”

(FR – Podcast)
La Tête au Carré : Zebrafish
Jean-Stéphane JOLY
2016 Dec 12, France Inter – La Tête au Carré

(FR – Interview)
Modèles animaux : 4 questions à Jean-Stéphane Joly, responsable du réseau EFOR
Jean-Stéphane JOLY
2016 Dec 8, www.recherche-animale.org

(FR – Interview)
CRISPR/Cas9 : “Il faut absolument débattre de ces techniques dans la société”
Jean-Stéphane JOLY
2016 Jul 5, Le Figaro

(FR – Interview)
Edition du génome : il est urgent de débattre
Jean-Stéphane JOLY
2016 May 25, Le Monde